Agreed, they are all snapshots.
Any VMDK file with a "-00001.vmdk or a -00010.vmdk" extension is a delta for a snapshot, and needs to be removed through snapshot manager.
Or if you use ESXi 5.x you can use the consolidate feature if the snaps tried to remove (Like we have seen with Veeam Backup & Replication) but did not succeed, then the snapshots will not display in snapshot manager and you need to consolidate. You can add a column on your "Virtual Machines" tab to display "Needs Consolidation" to see which VMs are affected as it will say yes or no.
If you are using an older version you have to create a new snapshot and in snapshot manager click on "Delete All"
Here is some useful information:
VMware vSphere 5.1
VMware KB: Delete all Snapshots and Consolidate Snapshots feature FAQ