I've moved the PCIe card to different slots ensuring the IRQ is not shared. The card will not passthrough to the Server 2008 R2 VM, or an install of OpenFiler. Here's the messages from openfiler
dmesg output
Adaptec aacraid driver 1.1-5[2461]-ms
alloc irq_desc for 18 on node -1
alloc kstat_irqs on node -1
aacraid 0000:03:00.0: PCI INT A -> GSI 18 (level, low) -> IRQ 18
AAC0: adapter kernel panic'd ffffffff.
aacraid 0000:03:00.0: PCI INT A disabled
lspci ouput
[root@localhost ~]# lspci
00:00.0 Host bridge: Intel Corporation 440BX/ZX/DX - 82443BX/ZX/DX Host bridge (rev 01)
00:01.0 PCI bridge: Intel Corporation 440BX/ZX/DX - 82443BX/ZX/DX AGP bridge (rev 01)
00:07.0 ISA bridge: Intel Corporation 82371AB/EB/MB PIIX4 ISA (rev 08)
00:07.1 IDE interface: Intel Corporation 82371AB/EB/MB PIIX4 IDE (rev 01)
00:07.3 Bridge: Intel Corporation 82371AB/EB/MB PIIX4 ACPI (rev 08)
00:07.7 System peripheral: VMware Virtual Machine Communication Interface (rev 10)
00:0f.0 VGA compatible controller: VMware SVGA II Adapter
00:10.0 SCSI storage controller: LSI Logic / Symbios Logic 53c1030 PCI-X Fusion-MPT Dual Ultra320 SCSI (rev 01)
00:11.0 PCI bridge: VMware PCI bridge (rev 02)
00:15.0 PCI bridge: VMware PCI Express Root Port (rev 01)
00:15.1 PCI bridge: VMware PCI Express Root Port (rev 01)
00:15.2 PCI bridge: VMware PCI Express Root Port (rev 01)
00:15.3 PCI bridge: VMware PCI Express Root Port (rev 01)
00:15.4 PCI bridge: VMware PCI Express Root Port (rev 01)
00:15.5 PCI bridge: VMware PCI Express Root Port (rev 01)
00:15.6 PCI bridge: VMware PCI Express Root Port (rev 01)
00:15.7 PCI bridge: VMware PCI Express Root Port (rev 01)
00:16.0 PCI bridge: VMware PCI Express Root Port (rev 01)
00:16.1 PCI bridge: VMware PCI Express Root Port (rev 01)
00:16.2 PCI bridge: VMware PCI Express Root Port (rev 01)
00:16.3 PCI bridge: VMware PCI Express Root Port (rev 01)
00:16.4 PCI bridge: VMware PCI Express Root Port (rev 01)
00:16.5 PCI bridge: VMware PCI Express Root Port (rev 01)
00:16.6 PCI bridge: VMware PCI Express Root Port (rev 01)
00:16.7 PCI bridge: VMware PCI Express Root Port (rev 01)
00:17.0 PCI bridge: VMware PCI Express Root Port (rev 01)
00:17.1 PCI bridge: VMware PCI Express Root Port (rev 01)
00:17.2 PCI bridge: VMware PCI Express Root Port (rev 01)
00:17.3 PCI bridge: VMware PCI Express Root Port (rev 01)
00:17.4 PCI bridge: VMware PCI Express Root Port (rev 01)
00:17.5 PCI bridge: VMware PCI Express Root Port (rev 01)
00:17.6 PCI bridge: VMware PCI Express Root Port (rev 01)
00:17.7 PCI bridge: VMware PCI Express Root Port (rev 01)
00:18.0 PCI bridge: VMware PCI Express Root Port (rev 01)
00:18.1 PCI bridge: VMware PCI Express Root Port (rev 01)
00:18.2 PCI bridge: VMware PCI Express Root Port (rev 01)
00:18.3 PCI bridge: VMware PCI Express Root Port (rev 01)
00:18.4 PCI bridge: VMware PCI Express Root Port (rev 01)
00:18.5 PCI bridge: VMware PCI Express Root Port (rev 01)
00:18.6 PCI bridge: VMware PCI Express Root Port (rev 01)
00:18.7 PCI bridge: VMware PCI Express Root Port (rev 01)
02:00.0 Ethernet controller: Intel Corporation 82545EM Gigabit Ethernet Controller (Copper) (rev 01)
03:00.0 RAID bus controller: Adaptec AAC-RAID
/var/log/messages output
kern.info<6>: May 15 18:36:16 localhost kernel: Adaptec aacraid driver 1.1-5[2461]-ms
kern.info<6>: May 15 18:36:16 localhost kernel: aacraid 0000:03:00.0: PCI INT A -> GSI 18 (level, low) -> IRQ 18
kern.warn<4>: May 15 18:36:16 localhost kernel: sr0: scsi3-mmc drive: 1x/1x writer dvd-ram cd/rw xa/form2 cdda tray
kern.info<6>: May 15 18:36:16 localhost kernel: Uniform CD-ROM driver Revision: 3.20
kern.err<3>: May 15 18:36:16 localhost kernel: AAC0: adapter kernel panic'd ffffffff.
kern.info<6>: May 15 18:36:16 localhost kernel: aacraid 0000:03:00.0: PCI INT A disabled
I'm about to throw in the towel (quit). Let me know if there is more information that will help tell me WHY this is happening.