What vendor certification for Interface did it see as Supported?
Do you have Spectrum? Are they being discovered there?
It could be the SNMP agent on the box isn't advertising those interfaces.
It could be the ifType of those sub-interaces are bring reported as Other (1). The VC doesn't discover Other interfaces by default. Check via mibwalk or mibtools in Spectrum.
If they are other, you can extend the OOTB VC and change the Filter to <Filter>ifType != 24</Filter> to filter out only loopback. Note: this could cause a large increase in interfaces discovered/poll in the Data Aggregator/Collectors. So you may need to add a Monitoring Profile filter to limit which poll.