Once a VM is recovered the replication is no longer taking place as there is no primary any more. Well, technically the secondary has become the primary.
So the configured replication is no longer valid, meaning you need to "stop" the replication, and reconfigure it to get it started again.
ExchangeA stopped, ExchangeB started, right? So now ExchangeA is offline, so the replication is no longer valid.
With ExchangeB running, "stop" the replication, then reconfigure it from scratch. In essence you'll be configuring a 'new' replication from ExchangeB back to your primary site. You can use the old ExchangeA as your replication seed if you like to reduce the amount of data to be transmitted.
Basically, after recovery, there is nothing else you can do other than stopping the old replication and reconfiguring it from scratch.