I know that this is old post, but still can be usefull.
https://kb.vmware.com/s/article/85685
I am pretty sure, that problem is fresh install with unpartitioned space. ESXi create without asking this partition for scratch and maybe osdata. I see 2 options: 1. install without drives 2. install with drives with VMFS partitions on it.
Option 1 not tested.
Option 2 works, and scratch and osdata is placed into existing datastore. ESXi
In my exact case I removed whole raid after istalation (locked by this partition), during reboot ESXi create automatically nessesary folders on second existing datastore, and after I can recreate my raid and make datastore on it. :(.