not quite, unfortunately. 1.1.1 maps SOME Ctrl_ shortcuts. so Cmd-C worksnow. not Cmd-S doesnt (you need to press Ctrl+S). this is driving me insane after only 5 mintes of using it.
before, i had used remapkey.exe to just siwtch the two keys, which worked perfectly for everything. with 1.1.1, this now gives me two Cmd/Windows keys, and no Ctrl; i had to undo the mapping and am now stuck with this half-baked remapping :(. not amused.
to answer the original question: on 1.1 (and once somene finds the secret switch to disable the new 1.1.1 behavior), remapkey.exe, available with Windows Server 2003, will switch the keys for you beautifully (without remapkey, you need to manually batch the registry, google should find infos for ya).