We are just starting to use VMware view here and haven't crossed this bridge yet, but I'd imagine it can't be that much different then using something like Ghost to image computers, which I have people here using and they don't seem to have any trouble.
With this in mind, I think that as long as you're using a recent version, you can install and manage it as usual in the master image and things will be fine on the SEPM end. VMware view and hard drive imaging techniques are about the same thing as far as SEP is concerned. Just beware, you're going to create a lot of orphaned entries in SEPM--esspecially if you use non-persistent desktops and delete the machine after the first use.
See
here for details regarding imaging with SEP, the important part is copied below.
"Releases prior to MR3 required that the HardwareID be deleted by following the instructions below in order for a unique id value to be generated. MR3 and greater will dynamically generate a new HardwareID value based on the MAC address of the new machine to which the image is deployed."