Have you read the help file or the Administrators guide to understand what NTP is exactly, what make up "Network Threat Protection," and how it protects your computers. Your answer lies within.
That said, I have never seen that much of a change in file copy tests except for heavily loaded servers that already average 30-50% of used bandwidth during production hours. For desktops, it's been negligible at best. Of course, you may have better luck as suggested with different driver versions, whether from the manufacturer itself (Intel, Broadcom, etc) Microsoft's own generic driver, or latest and greatest OE vendor drivers from the system maker.
You may also want to make sure you are on RU5 or RU6.