I would caution against ever excluding an IPS Detection type from your IPS policies, as this allows everything to use that method to connect to your SEP protected machines (i.e. a Nessus scanner belonging to someone else could potentially scan your endpoints)
Assuming this is an internally installed scanner, then my recommendation is to add the scanner's IP address to the list of Excluded Hosts in the IPS policies instead, and only for the duration of the scan. If you are using laptops, I'd also suggest utilising Location Awareness to ensure this applies only to the target SEP clients when they're inside the corporate network, too.