I don't believe there would be any issues with this. If the network aggregator traffic has unique source IP addresses it will create unique devices in NFA. If its only only 1 source IP address it will only create one device.
Ideally you would want to see a unique input and output interface to represent IN and OUT data in NFA. Without that I am not sure how much value the data would have. We would have to see what the flow data looks like in a pcap to understand how it would look in NFA.