First, so you have a bunch of -0000.vmdk files sitting around? If so, make sure that they are not attached to anything. If they are then we need to look into the CID and ParentCID information for each file so we can trace it back and see if we would need to clone the VMDK with vmkfstools. If they are not attached to anything I would say do the following:
1. Create a folder in the VM's folder called old_vmdk
2. Move those VMDKs into that folder.
3. Verify everything is running properly.
4. Go and delete the files and remove the folder that was created.
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