Well last night I tried again. Here is the path I took and the conclusion. Hint: it didn't go well...
Start with freshly build ESXi 5.5 up1 hosts.
1. Created a cluster with the following enabled
DRS - Full Auto
HA - Admission Control Disabled
vSAN - Manual
2. Checked all 3 hosts for required settings and networking
3. Placed all 3 hosts into maintenance mode
4. Added hosts to vSAN cluster one at a time waiting for the "Update VSAN Config" to fully complete.
5. Verified all 3 hosts still saw both their SSd and HDD.
6. Exited Maint Mode 1 at a time waiting for the process to complete before removing the next from Maint Mode
7. Double checked all settings once again. (Figured treating this like a rocket launch would help).
8. Before adding any disks to vSAN I reviewed the Cluster Props > vSAN > General page and it saw
3 hosts,
0 fo 3 Eligible SSDs,
0 of 3 Data disks,
Total Cap 0.00B,
Free Cap 0.00 B
Network Normal
Looks good!
9. Selected esx01, Clicked "Created a new disk group"
10. Selected the one SSD and one HDD, clicked OK and waited for "Create a New disk group" task to complete...
Viewed the C# client and it stated "Initialize disks to be used by VSAN
I probably will put in a feature request to be more specific in the Web Client.
11. The task timed out after 30 minutes and the HDD had disappeared. There was a spike in traffic to the HDD but then it quickly died out. (See attached image)
I think the vCenter vpxd timeout might need to be increased possibly. But still I don't think its going to solve anything.
http://kb.vmware.com/selfservice/microsites/search.do?language=en_US&cmd=displayKC&externalId=1017253
It doesn't appear the GA vSAN is lab/enthusiast friendly at this point. If you are going to test for prod, you will probably need to pony up the cash for HW on the HCL.
Still I am going to export logs and open a case with VMware and see if they can lend a hand from purely a software POV.
This is obviously not 100% hardware related, there is probably a bug or mis-configuration somewhere. The fact that the host loses it's disk (a fully functional disk and controller w/o vSAN enabled) and has issues during reboots ONLY when vSAN is enabled means there is more going on under the hood.
So for now it appears vSAN is a no go for me unless VMware support is willing to lend a hand on unsupported HW and has some ideas.
Maybe someone reading this has other ideas.
Thanks, JKasal