I finally got it working!!
I did a few thing so not sure which one worked but here is what I did,
1. Logged onto original machine
a. Removed it from the domain
b. Removed a snapshot (I didn’t know was there)
c. Shut down the machine
2. I cloned the machine to a template but stored it in a network location accessible to all the ESX servers rather that a local RAID.
3. Once complete I deployed from template using the wizard.
After all the cloning was done the original boot up took around 25mins but came up with all the new settings.
Hope this helps
Chris