Hi,
VMWare Standalone Converter uses .vmx file and you can only add a VM to inventory of your ESXi using the vmx file. You can define the destination datastore to be the NFS during conversion with thin provisioned selected and the source can be your local storage of ESXi. I have also read some documents on NFS that mentions all VMs stored in NFS systems are by default thin provisioned but am not so sure about it.
I have also done conversion within the same ESXi host (same datastore) for VM with thick to thin provisioned hard disk and define another destination datastore within the same ESXi host. Bottom line is if you are able to select different datastores within an ESXi host you can carry out conversion process.
Hope this information helps you, do let me know how your conversion process goes.
Nikhil