I am interested in this thread because we are in a similar position, only with ESP. Here is our roadmap:
1. Utilize the PASSWORD command to store passwords for batch IDs in ESP for Windows jobs ( UNIX uses setui, also not sure what the equivalent in Autosys is).
2. Utilize esplmi as a "framework" to automate the management of the passwords (enter, alter, delete) in ESP using the password command.
At this point, we are not sure exactly how this will be accomplished. We are evaluating whether to script this on a distributed system, or use JCL for it. In the end, once it gets automated, either a simple file dependency or perhaps a web services job could be used. The key question for us is, how will CyberArk "trigger" a job / application to run?
Hope this helps!